Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000175.1 Corchorus capsularis cultivar CVL-1 contig00175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12382

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
846--959
60
1.9
60
100
0
228
30
15
9
43
1.79
995--1041
22
2.2
21
85
7
60
27
14
4
53
1.60
1227--1305
23
3.5
23
80
3
97
37
16
6
39
1.74
1182--1474
22
13.5
22
71
11
151
36
15
8
40
1.77
1326--1479
66
2.3
66
80
8
170
34
14
8
42
1.76
2461--2492
16
2.0
16
93
0
55
43
21
18
15
1.87
2629--2679
16
3.2
16
75
10
59
37
33
9
19
1.85
3258--3323
8
8.4
8
83
9
91
39
21
1
37
1.63
3387--3426
8
5.2
8
85
11
57
37
20
2
40
1.66
3387--3426
14
2.7
14
88
7
53
37
20
2
40
1.66
6088--6156
31
2.2
31
97
0
129
44
0
15
39
1.47
6429--6458
13
2.2
14
94
5
53
6
36
0
56
1.26
9376--9430
27
2.0
27
85
0
74
60
3
20
16
1.51
10325--10368
6
7.3
6
89
0
61
63
0
15
20
1.31
11665--11691
13
2.1
13
100
0
54
22
7
33
37
1.82
11717--11764
22
2.2
22
92
0
78
27
10
18
43
1.82

Tables:   1

The End!