Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001753.1 Corchorus capsularis cultivar CVL-1 contig01753, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3096
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32


Found at i:247 original size:2 final size:2

Alignment explanation


    Indices: 236--275  Score: 64
    Period size: 2  Copynumber: 20.5  Consensus size: 2

        226 ATATTTTCTC

                                                       *                 
        236 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        276 ATGAAACCTA


Statistics
Matches: 35,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   34  0.97

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.