Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001757.1 Corchorus capsularis cultivar CVL-1 contig01757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3088
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34


Found at i:2474 original size:13 final size:13

Alignment explanation


    Indices: 2434--2489  Score: 53
    Period size: 12  Copynumber: 4.2  Consensus size: 13

       2424 ATTAAAATAT

                         
       2434 AAAT-ATTATTAA
          1 AAATAATTATTAA

                       *    
       2446 TAAATAATATGGTTAA
          1 -AAATAAT-T-ATTAA

                         
       2462 AAATAATTATTAA
          1 AAATAATTATTAA

                      *  
       2475 AAA-AATTATGAA
          1 AAATAATTATTAA

               
       2487 AAA
          1 AAA

       2490 ACATGTTCAA


Statistics
Matches: 37,  Mismatches: 3, Indels: 7
        0.79            0.06        0.15

Matches are distributed among these distances:
  12   11  0.30
  13   11  0.30
  14    3  0.08
  15    8  0.22
  16    4  0.11

ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34


Consensus pattern (13 bp):   
AAATAATTATTAA
Done.