Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001778.1 Corchorus capsularis cultivar CVL-1 contig01778, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2965
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:89 original size:42 final size:42

Alignment explanation


    Indices: 19--98  Score: 135
    Period size: 42  Copynumber: 1.9  Consensus size: 42

          9 TGGTTCGGAT

                                                      
         19 TAACCGCCGTCAACCCAAATTTTGACTAGGTTTTGATCGGGC
          1 TAACCGCCGTCAACCCAAATTTTGACTAGGTTTTGATCGGGC

                             *                     
         61 TAACCGCCGTCAACCCAGATTTCT-ACTAGGTTTTGATC
          1 TAACCGCCGTCAACCCAAATTT-TGACTAGGTTTTGATC

         99 CCGGGTGACA


Statistics
Matches: 36,  Mismatches: 1, Indels: 2
        0.92            0.03        0.05

Matches are distributed among these distances:
  42   35  0.97
  43    1  0.03

ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30


Consensus pattern (42 bp):   
TAACCGCCGTCAACCCAAATTTTGACTAGGTTTTGATCGGGC

Found at i:2403 original size:2 final size:2

Alignment explanation


    Indices: 2398--2423  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       2388 TGTTATATGT

                                                  
       2398 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

       2424 AAACTTATTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.