Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001780.1 Corchorus capsularis cultivar CVL-1 contig01780, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1874
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33


Found at i:1345 original size:3 final size:3

Alignment explanation


    Indices: 1332--1372  Score: 75
    Period size: 3  Copynumber: 14.0  Consensus size: 3

       1322 GATGACTTTC

                                                                   
       1332 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

       1373 ATATATATAT


Statistics
Matches: 37,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   2    2  0.05
   3   35  0.95

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (3 bp):   
TAT

Found at i:1377 original size:2 final size:2

Alignment explanation


    Indices: 1370--1399  Score: 51
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       1360 TTATTATTAT

                                                        
       1370 TA TA TA TA TA TA TA TA TA TA TA TA CTA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA T

       1400 GACTCATTGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2   25  0.93
   3    2  0.07

ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.