Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001781.1 Corchorus capsularis cultivar CVL-1 contig01781, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1143
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:740 original size:22 final size:22

Alignment explanation


    Indices: 687--731  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        677 TTATTTTTAT

                   *              
        687 TAAATTTTAAATTCTATTTAAA
          1 TAAATTTAAAATTCTATTTAAA

                                  
        709 TAAATTTAAAATTCTATTTAAA
          1 TAAATTTAAAATTCTATTTAAA

             
        731 T
          1 T

        732 TCTATTAAAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49


Consensus pattern (22 bp):   
TAAATTTAAAATTCTATTTAAA

Found at i:741 original size:10 final size:11

Alignment explanation


    Indices: 692--751  Score: 63
    Period size: 11  Copynumber: 5.6  Consensus size: 11

        682 TTTATTAAAT

                       
        692 TTTAAATTCTA
          1 TTTAAATTCTA

                    ** 
        703 TTTAAA-TAAA
          1 TTTAAATTCTA

                        
        713 TTTAAAATTCTA
          1 TTT-AAATTCTA

                       
        725 TTTAAATTCTA
          1 TTTAAATTCTA

                     * 
        736 -TTAAA-TCCA
          1 TTTAAATTCTA

                   
        745 TTTAAAT
          1 TTTAAAT

        752 ATTAAATCAA


Statistics
Matches: 40,  Mismatches: 5, Indels: 8
        0.75            0.09        0.15

Matches are distributed among these distances:
   9    3  0.08
  10   15  0.38
  11   17  0.43
  12    5  0.12

ACGTcount: A:0.43, C:0.08, G:0.00, T:0.48


Consensus pattern (11 bp):   
TTTAAATTCTA
Done.