Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001791.1 Corchorus capsularis cultivar CVL-1 contig01791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37


Found at i:158 original size:45 final size:45

Alignment explanation


    Indices: 105--194  Score: 180
    Period size: 45  Copynumber: 2.0  Consensus size: 45

         95 GCCACATTGG

                                                         
        105 ATTTAAGGATATATTTTTACGAGTTTCTGAATCTTGTTTCGGTTT
          1 ATTTAAGGATATATTTTTACGAGTTTCTGAATCTTGTTTCGGTTT

                                                         
        150 ATTTAAGGATATATTTTTACGAGTTTCTGAATCTTGTTTCGGTTT
          1 ATTTAAGGATATATTTTTACGAGTTTCTGAATCTTGTTTCGGTTT

        195 TATCAAAAAT


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   45  1.00

ACGTcount: A:0.22, C:0.09, G:0.18, T:0.51


Consensus pattern (45 bp):   
ATTTAAGGATATATTTTTACGAGTTTCTGAATCTTGTTTCGGTTT
Done.