Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001797.1 Corchorus capsularis cultivar CVL-1 contig01798, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2842
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:499 original size:17 final size:17

Alignment explanation


    Indices: 474--508  Score: 54
    Period size: 18  Copynumber: 2.1  Consensus size: 17

        464 ATTTTTAGGG

                             
        474 CTTTCTTTCT-TTTTTT
          1 CTTTCTTTCTCTTTTTT

                              
        490 CTTTCATTTCTCTTTTTT
          1 CTTTC-TTTCTCTTTTTT

             
        508 C
          1 C

        509 ATCTTTGGCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    5  0.29
  17    5  0.29
  18    7  0.41

ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74


Consensus pattern (17 bp):   
CTTTCTTTCTCTTTTTT
Done.