Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001799.1 Corchorus capsularis cultivar CVL-1 contig01800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 674

Length: 1124
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36


Found at i:380 original size:16 final size:16

Alignment explanation


    Indices: 359--393  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        349 TATCGGGTAT

                   *        
        359 TTTATTTCCTAGCGTA
          1 TTTATTTACTAGCGTA

                    *       
        375 TTTATTTATTAGCGTA
          1 TTTATTTACTAGCGTA

               
        391 TTT
          1 TTT

        394 GCTCTTTCTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57


Consensus pattern (16 bp):   
TTTATTTACTAGCGTA
Done.