Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001801.1 Corchorus capsularis cultivar CVL-1 contig01802, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2740
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35


Found at i:1736 original size:16 final size:16

Alignment explanation


    Indices: 1659--1736  Score: 61
    Period size: 16  Copynumber: 4.9  Consensus size: 16

       1649 TCTCGGATTT

                          **
       1659 TTCAGGT-TCGGGTTT
          1 TTCAGGTCTCGGGTCA

               *   *        
       1674 TTCGGGTTTCGGGTCA
          1 TTCAGGTCTCGGGTCA

               *     *      
       1690 TTCCGGTCTAGGGTCA
          1 TTCAGGTCTCGGGTCA

                  *    *     
       1706 TTCGAGTTC-CAGGTCA
          1 TTC-AGGTCTCGGGTCA

                           
       1722 TTCAGGTCTCGGGTC
          1 TTCAGGTCTCGGGTC

       1737 TACTGGGTCT


Statistics
Matches: 48,  Mismatches: 12, Indels: 5
        0.74            0.18        0.08

Matches are distributed among these distances:
  15   10  0.21
  16   35  0.73
  17    3  0.06

ACGTcount: A:0.10, C:0.22, G:0.32, T:0.36


Consensus pattern (16 bp):   
TTCAGGTCTCGGGTCA
Done.