Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001802.1 Corchorus capsularis cultivar CVL-1 contig01803, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2332
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31


Found at i:134 original size:2 final size:2

Alignment explanation


    Indices: 122--167  Score: 85
    Period size: 2  Copynumber: 23.5  Consensus size: 2

        112 ATGATAGATG

                                                                          
        122 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                   
        163 AT AT A
          1 AT AT A

        168 CACCACCTTC


Statistics
Matches: 43,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   42  0.98

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.