Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001803.1 Corchorus capsularis cultivar CVL-1 contig01804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1182
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41


Found at i:1125 original size:57 final size:58

Alignment explanation


    Indices: 1056--1167  Score: 192
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       1046 CCATCTACTC

                           *                                           
       1056 TGAGATAAATCATATTGATAA-TGACCCCTTAACCAGTTTTTCCA-TTCATTCATCCCA
          1 TGAGATAAATCATATCGATAATTGACCCCTTAACCAGTTTTTCCATTTC-TTCATCCCA

                                                                   
       1113 TGAGATAAATCATATCGATAATTGACCCCTTAACCAGTTTTTCCATTTCTTCATC
          1 TGAGATAAATCATATCGATAATTGACCCCTTAACCAGTTTTTCCATTTCTTCATC

       1168 TTCTTCATCC


Statistics
Matches: 52,  Mismatches: 1, Indels: 3
        0.93            0.02        0.05

Matches are distributed among these distances:
  57   20  0.38
  58   29  0.56
  59    3  0.06

ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37


Consensus pattern (58 bp):   
TGAGATAAATCATATCGATAATTGACCCCTTAACCAGTTTTTCCATTTCTTCATCCCA

Done.