Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001819.1 Corchorus capsularis cultivar CVL-1 contig01820, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2429
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30


Found at i:623 original size:17 final size:17

Alignment explanation


    Indices: 601--635  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        591 ACTAATCAAC

                    *        
        601 TTGATCAATAATTAATT
          1 TTGATCAACAATTAATT

                   *         
        618 TTGATCAGCAATTAATT
          1 TTGATCAACAATTAATT

             
        635 T
          1 T

        636 CCATATATGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46


Consensus pattern (17 bp):   
TTGATCAACAATTAATT
Done.