Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000182.1 Corchorus capsularis cultivar CVL-1 contig00182, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1931
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36


Found at i:867 original size:31 final size:30

Alignment explanation


    Indices: 829--889  Score: 77
    Period size: 31  Copynumber: 2.0  Consensus size: 30

        819 TGGGCTAAAA

                    **                     
        829 GCTCAATTTTGGGCCAAATCTTTATAAGTTG
          1 GCTCAATTAAGGGCCAAATCTTTA-AAGTTG

                          *    *          
        860 GCTCAATTAAGGGCTAAATGTTTAAAGTTG
          1 GCTCAATTAAGGGCCAAATCTTTAAAGTTG

        890 AGCAATAAAG


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  30    6  0.23
  31   20  0.77

ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36


Consensus pattern (30 bp):   
GCTCAATTAAGGGCCAAATCTTTAAAGTTG
Done.