Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001820.1 Corchorus capsularis cultivar CVL-1 contig01821, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2715
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33


Found at i:2680 original size:17 final size:17

Alignment explanation


    Indices: 2654--2688  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2644 GAGTGACTCA

                             
       2654 ACTCTAAATTAGTAGTG
          1 ACTCTAAATTAGTAGTG

                 *       *   
       2671 ACTCTTAATTAGTGGTG
          1 ACTCTAAATTAGTAGTG

             
       2688 A
          1 A

       2689 TCCAATGTGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.31, C:0.11, G:0.20, T:0.37


Consensus pattern (17 bp):   
ACTCTAAATTAGTAGTG
Done.