Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001821.1 Corchorus capsularis cultivar CVL-1 contig01822, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4218
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29


Found at i:97 original size:31 final size:32

Alignment explanation


    Indices: 40--100  Score: 106
    Period size: 32  Copynumber: 1.9  Consensus size: 32

         30 TAAACTCAGA

                                            
         40 TTCACATTATAAATAGTATTAGATGATATAAG
          1 TTCACATTATAAATAGTATTAGATGATATAAG

                        *                 
         72 TTCACATTATAATTAGTA-TAGATGATATA
          1 TTCACATTATAAATAGTATTAGATGATATA

        101 GATGATATTA


Statistics
Matches: 28,  Mismatches: 1, Indels: 1
        0.93            0.03        0.03

Matches are distributed among these distances:
  31   11  0.39
  32   17  0.61

ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39


Consensus pattern (32 bp):   
TTCACATTATAAATAGTATTAGATGATATAAG
Done.