Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001848.1 Corchorus capsularis cultivar CVL-1 contig01849, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33


Found at i:713 original size:26 final size:26

Alignment explanation


    Indices: 684--735  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        674 TGTCTTTATT

                                      
        684 TTATCTCTTTATTCAGAGTCAAAGAC
          1 TTATCTCTTTATTCAGAGTCAAAGAC

                                      
        710 TTATCTCTTTATTCAGAGTCAAAGAC
          1 TTATCTCTTTATTCAGAGTCAAAGAC

        736 GAAACAAAAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38


Consensus pattern (26 bp):   
TTATCTCTTTATTCAGAGTCAAAGAC

Found at i:1031 original size:14 final size:15

Alignment explanation


    Indices: 1008--1043  Score: 56
    Period size: 14  Copynumber: 2.5  Consensus size: 15

        998 AACAACTCTT

                 *         
       1008 TTTTTTTTAATA-CG
          1 TTTTTGTTAATATCG

                           
       1022 TTTTTGTTAATATCG
          1 TTTTTGTTAATATCG

                   
       1037 TTTTTGT
          1 TTTTTGT

       1044 AAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  14   11  0.55
  15    9  0.45

ACGTcount: A:0.17, C:0.06, G:0.11, T:0.67


Consensus pattern (15 bp):   
TTTTTGTTAATATCG

Done.