Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001858.1 Corchorus capsularis cultivar CVL-1 contig01859, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2216
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33


Found at i:432 original size:2 final size:2

Alignment explanation


    Indices: 407--453  Score: 60
    Period size: 2  Copynumber: 24.0  Consensus size: 2

        397 TGCTTTCTAT

                  *        *   *                                          
        407 TA TA CA TA TA AA TG TA TA -A TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                    
        448 TA TA TA
          1 TA TA TA

        454 AAGAATAAAT


Statistics
Matches: 38,  Mismatches: 6, Indels: 2
        0.83            0.13        0.04

Matches are distributed among these distances:
   1    1  0.03
   2   37  0.97

ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45


Consensus pattern (2 bp):   
TA

Done.