Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001863.1 Corchorus capsularis cultivar CVL-1 contig01864, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2007
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37


Found at i:426 original size:47 final size:47

Alignment explanation


    Indices: 357--529  Score: 276
    Period size: 47  Copynumber: 3.7  Consensus size: 47

        347 GAACTAGAGC

                                   *                       
        357 TCTAGTAAATTTAATTGACACCAAAAGTTGTCAAATTAAAATTTTAT
          1 TCTAGTAAATTTAATTGACACCAGAAGTTGTCAAATTAAAATTTTAT

                                                       *   
        404 TCTAGTAAATTTAATTGACACCAGAAGTTGTCAAATTAAAATTCTAT
          1 TCTAGTAAATTTAATTGACACCAGAAGTTGTCAAATTAAAATTTTAT

             *                   *              *    *   * 
        451 TTTAGTAAATTTAATTGACACTAGAAGTTGTCAAATCAAAAATTTCT
          1 TCTAGTAAATTTAATTGACACCAGAAGTTGTCAAATTAAAATTTTAT

                                             
        498 T-TAGTAAATTTAATTGACACCAGAAGTTGTCA
          1 TCTAGTAAATTTAATTGACACCAGAAGTTGTCA

        530 CACAAGAAAA


Statistics
Matches: 117,  Mismatches: 9, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  46   30  0.26
  47   87  0.74

ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37


Consensus pattern (47 bp):   
TCTAGTAAATTTAATTGACACCAGAAGTTGTCAAATTAAAATTTTAT

Done.