Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001865.1 Corchorus capsularis cultivar CVL-1 contig01867, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:351 original size:18 final size:18

Alignment explanation


    Indices: 330--392  Score: 90
    Period size: 18  Copynumber: 3.5  Consensus size: 18

        320 TAGAATTTTA

                     *    *   
        330 TGACGATATGGATGCTAG
          1 TGACGATATTGATGATAG

                 *            
        348 TGACGTTATTGATGATAG
          1 TGACGATATTGATGATAG

                 *            
        366 TGACGCTATTGATGATAG
          1 TGACGATATTGATGATAG

                     
        384 TGACGATAT
          1 TGACGATAT

        393 CGATCGTGAC


Statistics
Matches: 40,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   40  1.00

ACGTcount: A:0.29, C:0.10, G:0.29, T:0.33


Consensus pattern (18 bp):   
TGACGATATTGATGATAG
Done.