Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001868.1 Corchorus capsularis cultivar CVL-1 contig01870, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1734
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31


Found at i:134 original size:24 final size:25

Alignment explanation


    Indices: 102--150  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 25

         92 TTGAATGATT

                *                    
        102 GAGATTTG-AAAGTTTGAAGGTTGA
          1 GAGAATTGAAAAGTTTGAAGGTTGA

                        *       *    
        126 GAGAATTGAAAATTTTGAAGTTTGA
          1 GAGAATTGAAAAGTTTGAAGGTTGA

        151 AGGAAATGGC


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  24    7  0.33
  25   14  0.67

ACGTcount: A:0.37, C:0.00, G:0.29, T:0.35


Consensus pattern (25 bp):   
GAGAATTGAAAAGTTTGAAGGTTGA
Done.