Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001870.1 Corchorus capsularis cultivar CVL-1 contig01872, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:985 original size:2 final size:2

Alignment explanation


    Indices: 973--1005  Score: 57
    Period size: 2  Copynumber: 16.0  Consensus size: 2

        963 GGGTTATGTT

                                                            
        973 TA TA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       1006 AGTNTGGTA


Statistics
Matches: 30,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2   28  0.93
   3    2  0.07

ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48


Consensus pattern (2 bp):   
TA

Done.