Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001871.1 Corchorus capsularis cultivar CVL-1 contig01873, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1270
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30


Found at i:56 original size:27 final size:27

Alignment explanation


    Indices: 18--93  Score: 152
    Period size: 27  Copynumber: 2.8  Consensus size: 27

          8 AATGATCCGC

                                       
         18 TGAAGCTCATCCTCCGAATCATTCTCT
          1 TGAAGCTCATCCTCCGAATCATTCTCT

                                       
         45 TGAAGCTCATCCTCCGAATCATTCTCT
          1 TGAAGCTCATCCTCCGAATCATTCTCT

                                  
         72 TGAAGCTCATCCTCCGAATCAT
          1 TGAAGCTCATCCTCCGAATCAT

         94 AAATGATCCG


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   49  1.00

ACGTcount: A:0.24, C:0.33, G:0.12, T:0.32


Consensus pattern (27 bp):   
TGAAGCTCATCCTCCGAATCATTCTCT
Done.