Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001900.1 Corchorus capsularis cultivar CVL-1 contig01902, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35


Found at i:967 original size:15 final size:15

Alignment explanation


    Indices: 949--980  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        939 TAATAAATTT

                           
        949 TACTAAATAAAATAA
          1 TACTAAATAAAATAA

                    *      
        964 TACTAAATTAAATAA
          1 TACTAAATAAAATAA

              
        979 TA
          1 TA

        981 TATAAATAAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31


Consensus pattern (15 bp):   
TACTAAATAAAATAA
Done.