Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001907.1 Corchorus capsularis cultivar CVL-1 contig01909, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:299 original size:14 final size:14

Alignment explanation


    Indices: 280--318  Score: 78
    Period size: 14  Copynumber: 2.8  Consensus size: 14

        270 TGTTTTACAT

                          
        280 TAATTATAATTAAA
          1 TAATTATAATTAAA

                          
        294 TAATTATAATTAAA
          1 TAATTATAATTAAA

                       
        308 TAATTATAATT
          1 TAATTATAATT

        319 TTATTTATAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   25  1.00

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (14 bp):   
TAATTATAATTAAA

Found at i:343 original size:19 final size:20

Alignment explanation


    Indices: 316--354  Score: 62
    Period size: 19  Copynumber: 2.0  Consensus size: 20

        306 AATAATTATA

                *               
        316 ATTTTATTTATAATT-TTCT
          1 ATTTAATTTATAATTGTTCT

                                
        335 ATTTAATTTATAATTGTTCT
          1 ATTTAATTTATAATTGTTCT

        355 TGAAGTTGAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19   14  0.78
  20    4  0.22

ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64


Consensus pattern (20 bp):   
ATTTAATTTATAATTGTTCT
Done.