Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000191.1 Corchorus capsularis cultivar CVL-1 contig00191, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 892

Length: 1488
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36


Found at i:1298 original size:21 final size:21

Alignment explanation


    Indices: 1272--1314  Score: 70
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1262 GTTCTTCTTT

                                  
       1272 AAGGTTACTAAAAAA-GTTATA
          1 AAGGTTA-TAAAAAATGTTATA

                                 
       1293 AAGGTTATAAAAAATGTTATA
          1 AAGGTTATAAAAAATGTTATA

             
       1314 A
          1 A

       1315 TATTATAAGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  20    7  0.33
  21   14  0.67

ACGTcount: A:0.53, C:0.02, G:0.14, T:0.30


Consensus pattern (21 bp):   
AAGGTTATAAAAAATGTTATA

Done.