Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001916.1 Corchorus capsularis cultivar CVL-1 contig01918, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:93 original size:38 final size:38

Alignment explanation


    Indices: 42--118  Score: 154
    Period size: 38  Copynumber: 2.0  Consensus size: 38

         32 ATCTTTGTTT

                                                  
         42 TTCAAAATCTAACGTGTCAACAAATACATACAATACAA
          1 TTCAAAATCTAACGTGTCAACAAATACATACAATACAA

                                                  
         80 TTCAAAATCTAACGTGTCAACAAATACATACAATACAA
          1 TTCAAAATCTAACGTGTCAACAAATACATACAATACAA

             
        118 T
          1 T

        119 AAGGCGTTCC


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  38   39  1.00

ACGTcount: A:0.49, C:0.21, G:0.05, T:0.25


Consensus pattern (38 bp):   
TTCAAAATCTAACGTGTCAACAAATACATACAATACAA

Done.