Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001919.1 Corchorus capsularis cultivar CVL-1 contig01921, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 749

Length: 1249
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28


Found at i:878 original size:21 final size:20

Alignment explanation


    Indices: 852--907  Score: 85
    Period size: 21  Copynumber: 2.7  Consensus size: 20

        842 AAGACGGGAC

                                
        852 AGTTATAGTATTTAAATTAG
          1 AGTTATAGTATTTAAATTAG

                                 
        872 AGGTTATAGTATTTAAATTAG
          1 A-GTTATAGTATTTAAATTAG

                  *        
        893 AGTATAGAGTATTTA
          1 AGT-TATAGTATTTA

        908 CATAGATTAA


Statistics
Matches: 33,  Mismatches: 1, Indels: 3
        0.89            0.03        0.08

Matches are distributed among these distances:
  20    3  0.09
  21   30  0.91

ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43


Consensus pattern (20 bp):   
AGTTATAGTATTTAAATTAG
Done.