Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001921.1 Corchorus capsularis cultivar CVL-1 contig01923, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1067
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25


Found at i:359 original size:13 final size:13

Alignment explanation


    Indices: 341--367  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        331 GTCACCGGAT

                         
        341 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

                         
        354 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

             
        367 T
          1 T

        368 ATGTATGGTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41


Consensus pattern (13 bp):   
TCCTTCAATTCAA
Done.