Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001925.1 Corchorus capsularis cultivar CVL-1 contig01927, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28


Found at i:229 original size:57 final size:57

Alignment explanation


    Indices: 160--270  Score: 197
    Period size: 57  Copynumber: 1.9  Consensus size: 57

        150 GGATGAAGAA

                                                  *                  
        160 GATGAAGAAATGGAAAAACTGGTTAAGGGGTCATTATCGATATGATTTATCTCATGG
          1 GATGAAGAAATGGAAAAACTGGTTAAGGGGTCATTATCAATATGATTTATCTCATGG

                                                                   
        217 GATGAATG-AATGGAAAAACTGGTTAAGGGGTCATTATCAATATGATTTATCTCA
          1 GATGAA-GAAATGGAAAAACTGGTTAAGGGGTCATTATCAATATGATTTATCTCA

        271 GAGTAGATGG


Statistics
Matches: 52,  Mismatches: 1, Indels: 2
        0.95            0.02        0.04

Matches are distributed among these distances:
  57   51  0.98
  58    1  0.02

ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31


Consensus pattern (57 bp):   
GATGAAGAAATGGAAAAACTGGTTAAGGGGTCATTATCAATATGATTTATCTCATGG
Done.