Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001926.1 Corchorus capsularis cultivar CVL-1 contig01928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 677

Length: 1129
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38


Found at i:583 original size:12 final size:12

Alignment explanation


    Indices: 566--590  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        556 GATCAGATAA

                        
        566 GTCTTACAGTAT
          1 GTCTTACAGTAT

                        
        578 GTCTTACAGTAT
          1 GTCTTACAGTAT

             
        590 G
          1 G

        591 AACGAACCCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40


Consensus pattern (12 bp):   
GTCTTACAGTAT
Done.