Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001927.1 Corchorus capsularis cultivar CVL-1 contig01929, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2523
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:2247 original size:2 final size:2

Alignment explanation


    Indices: 2240--2283  Score: 79
    Period size: 2  Copynumber: 22.0  Consensus size: 2

       2230 AAATGGAGTA

                                                         *                
       2240 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

              
       2282 AT
          1 AT

       2284 TGGGTAATTA


Statistics
Matches: 40,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   40  1.00

ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.