Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001928.1 Corchorus capsularis cultivar CVL-1 contig01930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:544 original size:18 final size:18

Alignment explanation


    Indices: 523--560  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        513 TAACAACCAT

                              
        523 ATAATGAATAATAAATAA
          1 ATAATGAATAATAAATAA

                              
        541 ATAATGAATAATAAATAA
          1 ATAATGAATAATAAATAA

              
        559 AT
          1 AT

        561 CTTTTTTGGC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29


Consensus pattern (18 bp):   
ATAATGAATAATAAATAA
Done.