Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001929.1 Corchorus capsularis cultivar CVL-1 contig01931, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2463
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--79  Score: 149
    Period size: 2  Copynumber: 39.5  Consensus size: 2

                                             *                            
          1 TC TC TC TC TC TC TC TC TC TC TC NC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                                                                   
         43 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

         80 ACTTTGATTG


Statistics
Matches: 75,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   2   75  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.49


Consensus pattern (2 bp):   
TC

Found at i:2321 original size:2 final size:2

Alignment explanation


    Indices: 2314--2351  Score: 76
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       2304 TTTATTCATG

                                                                    
       2314 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       2352 GCATTTAAAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.