Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001931.1 Corchorus capsularis cultivar CVL-1 contig01933, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2414
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--32  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

                                                   *       
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

         33 ATGTATAATA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
TA

Done.