Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001932.1 Corchorus capsularis cultivar CVL-1 contig01934, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 828

Length: 1380
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30


Found at i:1107 original size:18 final size:18

Alignment explanation


    Indices: 1084--1142  Score: 82
    Period size: 18  Copynumber: 3.3  Consensus size: 18

       1074 CGATCGATAT

                             *
       1084 CGTCACTATCATCAATAG
          1 CGTCACTATCATCAATAA

                              
       1102 CGTCACTATCATCAATAA
          1 CGTCACTATCATCAATAA

                    *    *   *
       1120 CGTCACTAGCATCCATAT
          1 CGTCACTATCATCAATAA

                 
       1138 CGTCA
          1 CGTCA

       1143 TAAAATTCTA


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   37  1.00

ACGTcount: A:0.32, C:0.31, G:0.10, T:0.27


Consensus pattern (18 bp):   
CGTCACTATCATCAATAA

Found at i:1220 original size:18 final size:18

Alignment explanation


    Indices: 1199--1235  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1189 CAAAATCGAT

                         *    
       1199 ATCATCATCATCAGTAAG
          1 ATCATCATCATCAATAAG

                              
       1217 ATCATCATCATCAATAAG
          1 ATCATCATCATCAATAAG

             
       1235 A
          1 A

       1236 AAATGTTTAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27


Consensus pattern (18 bp):   
ATCATCATCATCAATAAG
Done.