Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001938.1 Corchorus capsularis cultivar CVL-1 contig01940, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2685
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35


Found at i:385 original size:26 final size:25

Alignment explanation


    Indices: 348--398  Score: 66
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        338 ACCATAATGA

                         *            
        348 TATAATAATAAATTATTAATAAATAT
          1 TATAATAATAAA-AATTAATAAATAT

                   *        *        
        374 TATAATACTAAAAATTCATAAATAT
          1 TATAATAATAAAAATTAATAAATAT

        399 ATCAATTTTC


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  25   11  0.50
  26   11  0.50

ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39


Consensus pattern (25 bp):   
TATAATAATAAAAATTAATAAATAT

Found at i:778 original size:24 final size:24

Alignment explanation


    Indices: 746--797  Score: 95
    Period size: 24  Copynumber: 2.2  Consensus size: 24

        736 ATCTGAGGCC

                              *     
        746 ATCTGATTGGCCTCATTCTCGAAA
          1 ATCTGATTGGCCTCATTCCCGAAA

                                    
        770 ATCTGATTGGCCTCATTCCCGAAA
          1 ATCTGATTGGCCTCATTCCCGAAA

                
        794 ATCT
          1 ATCT

        798 AATTCTCGGG


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33


Consensus pattern (24 bp):   
ATCTGATTGGCCTCATTCCCGAAA
Done.