Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001961.1 Corchorus capsularis cultivar CVL-1 contig01963, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 623

Length: 1039
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:332 original size:18 final size:18

Alignment explanation


    Indices: 309--344  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        299 TAAAGTAGGT

                              
        309 TGATTAAGAATTAGGATA
          1 TGATTAAGAATTAGGATA

                  *           
        327 TGATTAGGAATTAGGATA
          1 TGATTAAGAATTAGGATA

        345 AAATTGTATT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33


Consensus pattern (18 bp):   
TGATTAAGAATTAGGATA
Done.