Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001963.1 Corchorus capsularis cultivar CVL-1 contig01965, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1940
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34


Found at i:1816 original size:48 final size:48

Alignment explanation


    Indices: 1763--1933  Score: 173
    Period size: 48  Copynumber: 3.6  Consensus size: 48

       1753 CACCATATTA

                           *  *  *  *        *              
       1763 CTATCAGTCTCCTCCCCCTCCTTCTCCATCACCTCCTCCTCCTTATGT
          1 CTATCAGTCTCCTCCACCACCATCACCATCACCACCTCCTCCTTATGT

            *           *     *        *              *     
       1811 TTATCAGTCTCCACCACCGCCATCACCTTCACCACCTCCTCCATATGT
          1 CTATCAGTCTCCTCCACCACCATCACCATCACCACCTCCTCCTTATGT

                   *  *              *        *     *        
       1859 CTA-CAATTCCCCTCCACCACCATCCCCATCACCCCCTCCACCTTATGT
          1 CTATC-AGTCTCCTCCACCACCATCACCATCACCACCTCCTCCTTATGT

               *        *              
       1907 CTACCAGTCTCCACCACCACCATCACC
          1 CTATCAGTCTCCTCCACCACCATCACC

       1934 TTCGCCA


Statistics
Matches: 98,  Mismatches: 23, Indels: 4
        0.78            0.18        0.03

Matches are distributed among these distances:
  47    1  0.01
  48   96  0.98
  49    1  0.01

ACGTcount: A:0.19, C:0.51, G:0.04, T:0.26


Consensus pattern (48 bp):   
CTATCAGTCTCCTCCACCACCATCACCATCACCACCTCCTCCTTATGT
Done.