Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001973.1 Corchorus capsularis cultivar CVL-1 contig01976, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2115
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32


Found at i:1807 original size:109 final size:109

Alignment explanation


    Indices: 1616--1836  Score: 433
    Period size: 109  Copynumber: 2.0  Consensus size: 109

       1606 TTTTGTCCCG

                                                                             
       1616 AATAATGTGTCATATGGGGATATCTCATGTTTTGTAACAAAATCCCACTTAAATAGTAGTGGGAC
          1 AATAATGTGTCATATGGGGATATCTCATGTTTTGTAACAAAATCCCACTTAAATAGTAGTGGGAC

               *                                        
       1681 CAATTTGCTGAACCAATTGTGTAACAATACGTCATGGAGGACAA
         66 CAAATTGCTGAACCAATTGTGTAACAATACGTCATGGAGGACAA

                                                                             
       1725 AATAATGTGTCATATGGGGATATCTCATGTTTTGTAACAAAATCCCACTTAAATAGTAGTGGGAC
          1 AATAATGTGTCATATGGGGATATCTCATGTTTTGTAACAAAATCCCACTTAAATAGTAGTGGGAC

                                                        
       1790 CAAATTGCTGAACCAATTGTGTAACAATACGTCATGGAGGACAA
         66 CAAATTGCTGAACCAATTGTGTAACAATACGTCATGGAGGACAA

               
       1834 AAT
          1 AAT

       1837 TTCAAAACAA


Statistics
Matches: 111,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 109  111  1.00

ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29


Consensus pattern (109 bp):   
AATAATGTGTCATATGGGGATATCTCATGTTTTGTAACAAAATCCCACTTAAATAGTAGTGGGAC
CAAATTGCTGAACCAATTGTGTAACAATACGTCATGGAGGACAA
Done.