Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001988.1 Corchorus capsularis cultivar CVL-1 contig01991, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1161
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35


Found at i:1091 original size:10 final size:10

Alignment explanation


    Indices: 1076--1116  Score: 57
    Period size: 10  Copynumber: 4.1  Consensus size: 10

       1066 TCTATATTGA

                    * 
       1076 ATATATAATT
          1 ATATATAAGT

                      
       1086 ATATATAAGT
          1 ATATATAAGT

                       
       1096 A-AGTATAAGT
          1 ATA-TATAAGT

                      
       1106 ATATATAAGT
          1 ATATATAAGT

             
       1116 A
          1 A

       1117 ATTAAACTAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
   9    1  0.04
  10   26  0.93
  11    1  0.04

ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39


Consensus pattern (10 bp):   
ATATATAAGT

Found at i:1108 original size:20 final size:20

Alignment explanation


    Indices: 1079--1117  Score: 69
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1069 ATATTGAATA

                 *              
       1079 TATAATTATATATAAGTAAG
          1 TATAAGTATATATAAGTAAG

                               
       1099 TATAAGTATATATAAGTAA
          1 TATAAGTATATATAAGTAA

       1118 TTAAACTAAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38


Consensus pattern (20 bp):   
TATAAGTATATATAAGTAAG
Done.