Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001990.1 Corchorus capsularis cultivar CVL-1 contig01993, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1126
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35


Found at i:669 original size:21 final size:21

Alignment explanation


    Indices: 644--685  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        634 AGAATGATAA

                           *     
        644 CTTATTATATTAGATTATATT
          1 CTTATTATATTAGATAATATT

                                 
        665 CTTATTATATTAGATAATATT
          1 CTTATTATATTAGATAATATT

        686 AGAGTTAATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55


Consensus pattern (21 bp):   
CTTATTATATTAGATAATATT
Done.