Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001999.1 Corchorus capsularis cultivar CVL-1 contig02002, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:420 original size:19 final size:19

Alignment explanation


    Indices: 396--433  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        386 CTAACTCTTT

                         *     
        396 AGTATCTGTTCTTGTTTGA
          1 AGTATCTGTTCTTATTTGA

                               
        415 AGTATCTGTTCTTATTTGA
          1 AGTATCTGTTCTTATTTGA

        434 TACATTGTAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.18, C:0.11, G:0.18, T:0.53


Consensus pattern (19 bp):   
AGTATCTGTTCTTATTTGA
Done.