Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002006.1 Corchorus capsularis cultivar CVL-1 contig02009, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 950

Length: 1584
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38


Found at i:1241 original size:33 final size:33

Alignment explanation


    Indices: 1178--1241  Score: 85
    Period size: 33  Copynumber: 1.9  Consensus size: 33

       1168 TGAGGACAAC

                      *      * *             
       1178 TTTAATAGTAGGGTATATATATAGATAAAAAAT
          1 TTTAATAGTAAGGTATAAAAATAGATAAAAAAT

                                            
       1211 TTTAATAGTAAGGTATAAAAAATAGA-AAAAA
          1 TTTAATAGTAAGGTAT-AAAAATAGATAAAAA

       1242 GGTATAGAGG


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  33   20  0.74
  34    7  0.26

ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31


Consensus pattern (33 bp):   
TTTAATAGTAAGGTATAAAAATAGATAAAAAAT
Done.