Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002008.1 Corchorus capsularis cultivar CVL-1 contig02011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 981

Length: 1636
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:433 original size:29 final size:28

Alignment explanation


    Indices: 371--435  Score: 76
    Period size: 29  Copynumber: 2.2  Consensus size: 28

        361 TACTTGTACG

                *                     * 
        371 ATTTTGACGTTTTGTCCCATAAATTTTA
          1 ATTTGGACGTTTTGTCCCATAAATTTCA

                               * *        
        399 ATTTTGGACGTTTTGTCCCCTGAATTTGCA
          1 A-TTTGGACGTTTTGTCCCATAAATTT-CA

                   
        429 ATTTGGA
          1 ATTTGGA

        436 GCCACGTTAA


Statistics
Matches: 31,  Mismatches: 4, Indels: 3
        0.82            0.11        0.08

Matches are distributed among these distances:
  28    1  0.03
  29   28  0.90
  30    2  0.06

ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46


Consensus pattern (28 bp):   
ATTTGGACGTTTTGTCCCATAAATTTCA
Done.