Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002034.1 Corchorus capsularis cultivar CVL-1 contig02038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 950

Length: 1584
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40


Found at i:413 original size:20 final size:19

Alignment explanation


    Indices: 388--425  Score: 58
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        378 GAATTTATTA

                                
        388 ATAACCTTATAATTGTTTTG
          1 ATAACC-TATAATTGTTTTG

                   *          
        408 ATAACCTCTAATTGTTTT
          1 ATAACCTATAATTGTTTT

        426 TTAGTAATCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  19   11  0.65
  20    6  0.35

ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50


Consensus pattern (19 bp):   
ATAACCTATAATTGTTTTG

Found at i:1557 original size:2 final size:2

Alignment explanation


    Indices: 1546--1584  Score: 71
    Period size: 2  Copynumber: 20.0  Consensus size: 2

       1536 CATTAGCTAG

                                                                       
       1546 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA


Statistics
Matches: 36,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   35  0.97

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.