Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000205.1 Corchorus capsularis cultivar CVL-1 contig00205, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1002
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39


Found at i:896 original size:21 final size:22

Alignment explanation


    Indices: 857--903  Score: 78
    Period size: 21  Copynumber: 2.2  Consensus size: 22

        847 TATTGTTATT

                        *         
        857 TTAGATCACATTTGATCATTCA
          1 TTAGATCACATTAGATCATTCA

                                  
        879 TTAGATCACA-TAGATCATTCA
          1 TTAGATCACATTAGATCATTCA

                
        900 TTAG
          1 TTAG

        904 TTTGGTAGAG


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  21   14  0.58
  22   10  0.42

ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38


Consensus pattern (22 bp):   
TTAGATCACATTAGATCATTCA
Done.