Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002055.1 Corchorus capsularis cultivar CVL-1 contig02059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1547
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35


Found at i:86 original size:2 final size:2

Alignment explanation


    Indices: 81--112  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

         71 TTGTTTGTTT

                                                           
         81 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        113 CATACTTGAG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:1472 original size:22 final size:22

Alignment explanation


    Indices: 1444--1486  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1434 TTTAAATAAA

                        *  *      
       1444 TAAAAATAAAAATAATTATTAT
          1 TAAAAATAAAAAGAAATATTAT

                   *             
       1466 TAAAAATTAAAAGAAATATTA
          1 TAAAAATAAAAAGAAATATTA

       1487 AAATAAAAAA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33


Consensus pattern (22 bp):   
TAAAAATAAAAAGAAATATTAT
Done.