Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002059.1 Corchorus capsularis cultivar CVL-1 contig02063, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1068
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39


Found at i:809 original size:57 final size:57

Alignment explanation


    Indices: 740--850  Score: 197
    Period size: 57  Copynumber: 1.9  Consensus size: 57

        730 CCATCTACTC

                           *                                          
        740 TGAGATAAATCATATTGATAATGACCCCTTAACCAGTTTTTCCA-TTCATTCATCCCA
          1 TGAGATAAATCATATCGATAATGACCCCTTAACCAGTTTTTCCATTTC-TTCATCCCA

                                                                  
        797 TGAGATAAATCATATCGATAATGACCCCTTAACCAGTTTTTCCATTTCTTCATC
          1 TGAGATAAATCATATCGATAATGACCCCTTAACCAGTTTTTCCATTTCTTCATC

        851 TTCTTCATCC


Statistics
Matches: 52,  Mismatches: 1, Indels: 2
        0.95            0.02        0.04

Matches are distributed among these distances:
  57   49  0.94
  58    3  0.06

ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36


Consensus pattern (57 bp):   
TGAGATAAATCATATCGATAATGACCCCTTAACCAGTTTTTCCATTTCTTCATCCCA
Done.