Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002066.1 Corchorus capsularis cultivar CVL-1 contig02070, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 821

Length: 1369
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.27


Found at i:1281 original size:14 final size:14

Alignment explanation


    Indices: 1262--1292  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       1252 TGTACAATAT

                          
       1262 ATAAGAATTATACG
          1 ATAAGAATTATACG

                          
       1276 ATAAGAATTATACG
          1 ATAAGAATTATACG

               
       1290 ATA
          1 ATA

       1293 TATATCCATC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29


Consensus pattern (14 bp):   
ATAAGAATTATACG
Done.